PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G06800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 106aa    MW: 11682 Da    PI: 10.1461
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G06800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1431e-1336871162
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1 11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
                      +NR++A+  R+RKka++  Le kvk Le++N++L ++ ++l++e + l++ 
  LPERR02G06800.1 36 LRNRVSAQQARERKKAYLSDLEVKVKDLEKKNSELEERFSTLQNENQMLRQI 87
                     69*********************************************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-102990IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.56E-133588No hitNo description
CDDcd147041.52E-163582No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-163590No hitNo description
PfamPF001705.7E-123688IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.8183791IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MESDEEIRRV PELGLELPGG ASTSGRKAGG GPQSLLRNRV SAQQARERKK AYLSDLEVKV  60
KDLEKKNSEL EERFSTLQNE NQMLRQILKN TTVSRRGPGS SGGDGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A2e-165190342Transcription factor HY5
2oqq_B2e-165190342Transcription factor HY5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8337681e-76CT833768.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA034A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951525.15e-55PREDICTED: transcription factor HY5-like
SwissprotQ9SM504e-37HY5_SOLLC; Transcription factor HY5
TrEMBLA0A0D9VDH96e-70A0A0D9VDH9_9ORYZ; Uncharacterized protein
STRINGSi018524m2e-54(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-36bZIP family protein